Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence------MHEITLHEVRQLIAS-----LRTVYAAQFNKQFPTSGESAIPLSVVEQIALKTLVGVQQNQFNNALARLLTAGGRFMPSFAEFRTWCIGESWMSPEEAWSRACKFTTDRTVVITQITKYALDEVMYLIEAGQMRAAQDNFFGTYNVMVAKAQLKGRQQEFYTPPLQLEHKEPEHTPVSNDEV--QKQLKSLMERLKINGRKPAPVQKLQAKEKEPELAKELGPDPFDNPHEYAEMCRREGMPIPRNILQLIEGANV
1EFP Chain:B ((1-246))MKVLVPVKRLIDYNVKARVKSDGSGVDLANVKMSMNPFDEIAVEEAIRLKEKGQAEEIIAVSIGVKQAAETLRTALAMGAD---RAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMN--ATGQMLAAILGWAQATFASKVEIEGAKAKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKA---KKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVG--SVDELVGKL------


General information:
TITO was launched using:
RESULT:

Template: 1EFP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1274 42878 33.66 184.03
target 2D structure prediction score : 0.30
Monomeric hydrophicity matching model chain B : 0.59

3D Compatibility (PKB) : 33.66
2D Compatibility (Sec. Struct. Predict.) : 0.30
1D Compatibility (Hydrophobicity) : 0.59
QMean score : 0.121

(partial model without unconserved sides chains):
PDB file : Tito_1EFP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1EFP-query.scw
PDB file : Tito_Scwrl_1EFP.pdb: