Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNFIKKWSVGLLSMLPVLAMAHPGHDHVHSGFMAGFIHPFTGLDHLIMALG----------FGVLLWSAAKQWK-IAGVITLSITLVIGFLVGAQGLVPANVAEYGIVTSLIITAIALWTKSNRILPIAAALLASFHGMAHGVELAHAG-HIVALVTGMVA-GMALIYCGGLALGAVFTRYVPYGKKIVGACAALVAVIGLS
5GOX Chain:A ((5-185))-KEINQTRDRLAKLNKELASSEQNKNHINNELKRKEEQLSSYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCP--VCQRVFQTEAELQEVISDLQSK--LRLAPDKLKSTESELKKKEKRRDEML------GLVPMRQSIIDLKEKEIPELRNKLQNVNRDIQRLK----------


General information:
TITO was launched using:
RESULT:

Template: 5GOX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 302 -12183 -40.34 -72.51
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.60

3D Compatibility (PKB) : -40.34
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.60
QMean score : 0.010

(partial model without unconserved sides chains):
PDB file : Tito_5GOX.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5GOX-query.scw
PDB file : Tito_Scwrl_5GOX.pdb: