Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMSAEIESHILKKYEIQAQLGQGAYGIVWRALERKHNRVVALKKIYDAFQNSTDAQRTFREIMFLHRLHHPNIIKLLHVHRA---FNDRDIYLVFEYMETDLHVVIRANILEEIHKQFIIYQLLKTMKYLHSAEILHRDMKPSNLLVNSDCTMKVADFGLARSILSLEGEQASRPVLTDYIATRWYRPPEILLGSTRYTKGVDMWSVGCILGELMLGKPIFPGRSTTNQLELICSVTGMPSAADVAATNSQFAHAMLRDIHCAHRRTFAELLPSASADALDLIERLMCFNPNRRMTAAEALEHPYVAAFHRPDDEPVATEPITVSLPDSQRLPLAKYRDAIYEQIAALRRSSTSADQRQRAERQAAGSTASRKTSVSSASAGGSRGGTGTSGVTRPATSSSSSAAAGAAPQRSVVKPTSTSAVNEASSSKAYARPAFRSATSAASGLESRPVAREAAVRK
4NIF Chain:B ((26-357))-----------RYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKI-SPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA---DPDH---GFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDM-ELDDLPKEKLKELIFEETARFQ---------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4NIF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1661 -52003 -31.31 -159.52
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain B : 0.75

3D Compatibility (PKB) : -31.31
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.467

(partial model without unconserved sides chains):
PDB file : Tito_4NIF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4NIF-query.scw
PDB file : Tito_Scwrl_4NIF.pdb: