Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNPATQDAAAAEEESPVVCTAKKYIFDLHSYAWKESDCLIRIPRPHKGMGHGGMRVCYAVEDVDE--------------------------------EGAGTPMVAKMFRRNISD-VVEKDYFNEGAAQCMCEEFANNFNRIHLTNIHKPNISFLQCYVVRIPRDSIPVASQKKRTGFFSYKTQDTGEVMFVMEPMLSGKFTKYNSNYGETYREDKKAALTSSEAKRRTEVFEAAEAFSHFTLVESGGSMLVCDLQGVNDFLTDPQIHTEDGKGLGMGNMGQEGIDKWIEKHECNEICRALGLQPLLGAVPSSTACAKEENLNLGLRAQLQSQNPVRLRDLVPLTKPLEEMTEAERIEYALKVSRLTD
3PDT Chain:A ((22-273))----------------TGEMGILWEFDPIINKWIRLS--MKLKVERKPFAEGALREAYHTVSLGVGTDENYPLGTTKLFPPIEMISPISKNNEAMTQLKNGTKFVLKLYKKE--QQASRELYFEDVKMQMVCRDWGNKFNQKKPP----KKIEFLMSWVVELIDRSPS---------------SNGQPILCSIEPLLVGEFKKNNSNYGAVLTN-----------------RSTPQAFSHFTYELSNKQMIVVDIQGVDDLYTDPQIHTPDGKGFGLGNLGKAGINKFITTHKCNAVCALLDLDV---------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3PDT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1023 20222 19.77 93.62
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : 19.77
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.480

(partial model without unconserved sides chains):
PDB file : Tito_3PDT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3PDT-query.scw
PDB file : Tito_Scwrl_3PDT.pdb: