Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
5CPJ Chain:B ((25-102))-------------------------NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG


General information:
TITO was launched using:
RESULT:

Template: 5CPJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 173 -23830 -137.75 -305.51
target 2D structure prediction score : 0.83
Monomeric hydrophicity matching model chain B : 0.91

3D Compatibility (PKB) : -137.75
2D Compatibility (Sec. Struct. Predict.) : 0.83
1D Compatibility (Hydrophobicity) : 0.91
QMean score : 0.563

(partial model without unconserved sides chains):
PDB file : Tito_5CPJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5CPJ-query.scw
PDB file : Tito_Scwrl_5CPJ.pdb: