Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequence---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIDD--IGQFAIWQDRMFGQTAQHGLTNSLKDFWIFLLNIGPQLAFFCQMLRCSRSVEQGTGNHRREFNMIQQIFSHFGMTHLGQIKLVYQESIDLELLVNALNHHLLIDRLVLTPNQ------ITIEIDRQIVHGLDL--LKGRKDKEIIDIKSMFRQLELASTQQICPINQ-RVHHGILA-FGEISDLVPAKNLPNRQD------------------------------------------------------------------------------------------------
5H8Y Chain:D ((11-576))KRSKVEIIKEKSNFLRYPLNEELVSAPNINESAVQLIKFHGSYQQTDRDVQKNYSFMLRTKNPCGKVPNQLYLAMDTLADEFGIGTLRLTTRQTFQLHGVLKKNLKTVLSTVIKNMGSTLGACGDLNRNVLAPAAPYVKKDILFAQQTAENIAALLTPQSGAYYDLWVDEEPPEVTKARNDNGTNFPDSPEPIYGTQYLPRKFKVAVTAAGDNSVDILTNDIGVVVVSDDAGEPIGFNIYVGGGMGRTHRVETTFPRLADPLGYVPKEDILYAIKAIVVTQRENGRRDDRKYSRMKYMIDRWGIDRFRAEVEKYYGKKFE---SFRPLPEWQFNSYLG--------------WQEQGDGK------LFYGVHVDNGRVG-GQAKKTLREIIEKYNL-----------DVSITPNQNLILCGIDQAWREPITTALAQAGLLEPKDVDPLNLTAMA-----CPALPLCPLAQTEAERGILPILKRIRAVFNKVGIKDSESVVVRITGCPNGCARPYMAELGFVGDGPKSYQIWLGGTPNQSTLAESFMDKVKLDDIEKVLEPLFTYWNGTRQEGESFGSFTNRTGFDKLKEVVNKW


General information:
TITO was launched using:
RESULT:

Template: 5H8Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 627 20442 32.60 137.19
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain D : 0.56

3D Compatibility (PKB) : 32.60
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.56
QMean score : 0.256

(partial model without unconserved sides chains):
PDB file : Tito_5H8Y.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5H8Y-query.scw
PDB file : Tito_Scwrl_5H8Y.pdb: