Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MLKINDFPHDNNFWKVEWIGGVYNDIDGEPRIRIYLAQIKSN------IERQKTLYNSSLEVRNQ----QNISSVHDVKIGLIQFIPIGSVWKNGILDQ-SFTAQYEQFNFNSDTPSEVCFQSQYGGIAETGLNNTTEWNNHLNDFHYRIVNSEARALGNYINVFYDYNGLSRIYIPSIVILQACYITSPKSARH----IIFGQINKLLDPETSGFIDKETFRIHLHRDYKDIEAPMIANLATNFNAKMGLRTLRQSLVKESNITSISTPKRLKISFPFSN---DFSIKVKGKYIMENNKIYGFFVTQIIEFSTKFD--------------FTKLVIFRKNSNQKGKEKA-ENLQNAYEGCNAVRPSHSESLDDKDESQPLIFTHDQVSNQNLPQSIDF--PLCSNISNLE-------VLKEDKDIQYYQNASYTNLN--LRPSNTTSTGPAISSNNGV-----SELQIEPSLPVDLEYFFDVLEILNKLGY------QFKSIAVNNSRDHPRGIINQFNRFIKNLHKWHLQDDDQTPRPFIVAEMIYKGAFYYLLDIAPRKGAALSAQLIRAYTGEQITPTAFAILLNDVARTSPKGWSVLDHAKYSQKWQHFRIEHNRNNKPELVAKNIIKKLG
4YJ1 Chain:A ((1-615))GFSPLMDFFHSVEGRNYGELRSLTNETYQISENVRCTFLSIQSDPFAPGSQVRLVCPCTFSLEKVLQTTDLAAANPCRRVAAEDFILRSFHAGYRNGIPRRTSGAVQVLRPSQHVLERSTVGLVKAHQ--AEIEIFARVKLPGH----------------GRRID---GHGAIDIFYNELVPLLEQCVVGLNEEDLHQHVICVHDQEVLRSNLLGAGYVAFVANGAILPRDAGNSDKPLRDN-AVPFQSPKSLECSFTLPHSGKTITGMGLPPGLTLIAGGGFHGKSTLLRALEVGIYNHVPDDGRTYVVVDPTAVKIRAEDRRSVHGVDISPFINNLPFGKTTNFFVTADASGSTSQAANIMEALELGSQLLLLDEDTCATNLMYRDALMQMLVPRAQEPITPFVERVADLSQNHGVSSIMVIGGSGQYFPQARVVLVMNAYQISDCTKEAKEIASNSSLPGDTASVFIPDVNRCFDPDGSFTTVRRGTKVSGIGTESIRFSEETIDLSMVEQIVEEGQVNAIAQCLALLYDGE------PRIVPEMTTKGGA---LTQLPSPGGVCEIQ-RGKFNSNFSSMIAGCCSHQHDKRLELRTPSCYLPRGFTSATRHIEIGAALNRLRTLRTVT------


General information:
TITO was launched using:
RESULT:

Template: 4YJ1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2816 94960 33.72 174.88
target 2D structure prediction score : 0.44
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : 33.72
2D Compatibility (Sec. Struct. Predict.) : 0.44
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.079

(partial model without unconserved sides chains):
PDB file : Tito_4YJ1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YJ1-query.scw
PDB file : Tito_Scwrl_4YJ1.pdb: