Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----MNKL-KLKGRPRKGKFECFSTQAWFYAV-QMV-SNIGTAYALEKVFFPTRFKTVKGKIIRPRLFDRYKMGTITVGKKLVQQVEASYTNTALWFNAVLWKILDERCDDFELNAWFRSLDQNLMQFFFKSTLTVDDSIKIQVKKINQKNFKKLKNY--ELLDVFTLVVLAIQMSIEKKDMDSLDKALYGYHQIRRTLQEHPIFSKFYENLLSTLELHFIQQGEHTFGSPIALMLWEYDPMMSVH-PQMRMATISEGKSVQQTISDASYLVKAQVCCFEKYYCNSDLKATIRLYYSIPLGLSLLPNVDSTVLIPFAKKFFPLARFPEIIAQDKENMIAMTMMFG----DEL----DWESLESMVGIAVLQEIVYFNEDRFVETHTRFWQERLGLIK
5D8M Chain:A ((8-339))RPVAPLAHAMSPSVLVPAGLAGIQDGRGRFREIMTAIMADHGA--------FLPGDRSSDGDGILWRL----------AGEPGPTGRPVPLGVSTAGIRLVLVPGLLAECVS-ESSLLFDDARPDVERYGYATTL-----VRTGGRWGSARNAAIIHEVVAKLPENDTIVFVTHS---------------KGAVDVLEALVSYPDLAARTAAVVSV--------AGAIDGSPLAETFSDGLLRFAESMP-LSSCPPGEGTEALDSLKRAYRLRFLAE---------HRLPARVR-YYSLAAFASREET--SAILRPFYDILAKTDALNDGLVIAADAIIPGGTLLGYPNADHLAVAMPFSKKPSLLTSVISKN--SYPRPALLEAIARYVEEDL----


General information:
TITO was launched using:
RESULT:

Template: 5D8M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1658 5492 3.31 17.54
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : 3.31
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.194

(partial model without unconserved sides chains):
PDB file : Tito_5D8M.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5D8M-query.scw
PDB file : Tito_Scwrl_5D8M.pdb: