Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVNGEIFIGQGQALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVVVADIEKLTVWGNHSPTMYADYRFATANGESLKDKINDPAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGS-YGIPEGVMFGFPVTTE-NGEYKIVQGLEIDEFSRERINFTLNELEEERAAIADMVK
1CIV Chain:A ((40-366))-KKIINVAVSGAAGMISNHLLFKLASGEVFGPDQPISLKLLGS--ERSFAALEGVAMELEDSLYPLLRQVSIGIDPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIHGIPVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRSSAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEFVKDVIFDDYLSKKIKKSEDELLAEKKCVAHLT-


General information:
TITO was launched using:
RESULT:

Template: 1CIV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1841 -143033 -77.69 -441.46
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain A : 0.84

3D Compatibility (PKB) : -77.69
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.544

(partial model without unconserved sides chains):
PDB file : Tito_1CIV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1CIV-query.scw
PDB file : Tito_Scwrl_1CIV.pdb: