Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--------------------MKKIKKESYGFLTIFVACIMMVLQRILISAVTIPTYATNPGRFYIYTFLQTSVVIGANLIPLYMGYQYQKIARLKVLHYLSRFAFIFLIATLVCNIFFLRTSWQLEYS----------------------------------------------------------------------
3UX4 Chain:A ((1-195))MLGLVLLYVGIVLISNGICGLTKVDPKSTAVMNFFVGGLSIVCNVVVITYSALHPTAPS--------FYGPATGLLFGFTYLYAAINHTFGLDWRPYSWYSLFVAINTVPAAILSH----------YSDMLDDHKVLGITEGDWWAIIWLAWGVLWLTAFIENILKIPLGKFTPWLAIIEGILTAWIPAWLLFIQHWV


General information:
TITO was launched using:
RESULT:

Template: 3UX4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 260 -43234 -166.28 -480.37
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain A : 0.52

3D Compatibility (PKB) : -166.28
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.52
QMean score : 0.190

(partial model without unconserved sides chains):
PDB file : Tito_3UX4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3UX4-query.scw
PDB file : Tito_Scwrl_3UX4.pdb: