Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIEFINVSKSYGKK----QALKDLSLSIRQGEIFGFLGHNGAGKSTTIKSLVSIIEPSSGTILVDGMKLT---ENRLS-IKQKIGYVPDSPDIFLQLTAGEYWDLISAAYELDTQKKE---KRLAELTALFDMYSHQNETIASFSHGMRQKTILIGTLLPDPDIWVLDEPLQGLDPQAAFDLKEMMKAHAAK-GKTVIFSTHVLDTAQQLCDKLAILKKGELIYQGAVSELLNGSPDETLEKIYLKMAGRQATGDGPYV
3TUJ Chain:C ((2-230))-IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQH---FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS--------------------------


General information:
TITO was launched using:
RESULT:

Template: 3TUJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1078 15687 14.55 72.29
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain C : 0.77

3D Compatibility (PKB) : 14.55
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.494

(partial model without unconserved sides chains):
PDB file : Tito_3TUJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3TUJ-query.scw
PDB file : Tito_Scwrl_3TUJ.pdb: