Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAELLTLARPYAKAAFAYASEQGATDNWSNALQVLSAAVQDEAFSAYLNR---PEHTPAEQVKLFAKVLGEDQSQAVSNFLTLLADNDRLVLLPEIAAEYEQLKSQNNNNVDVVIESAFPLTAEQEQLLKSALEKRFNSTVTVSVEVKPELIAGVVIRAGDQVIDDSALNKLEKMRTRLLA
5T4P Chain:L ((3-162))--EFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPE-TLAES---FIAVAGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAMEKRLSRKVKLNAKIDKSVMAGVIIRAGDMVIDG---------------


General information:
TITO was launched using:
RESULT:

Template: 5T4P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain L - contact count / total energy / energy per contact / energy per residue : 594 -16303 -27.45 -103.84
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain L : 0.75

3D Compatibility (PKB) : -27.45
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.415

(partial model without unconserved sides chains):
PDB file : Tito_5T4P.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5T4P-query.scw
PDB file : Tito_Scwrl_5T4P.pdb: