Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRPTVLCFSGLDPSGGAGLQADIEAIGQSGAHAAIACTALTIQNSQQVFGSEATSKELLLAQANAVVGDLPIKCVKSGMLGTTDNIAALAEFLRAHPDYQYVLDPVLVANSGGSLGDQATLVKAFVELILLATLITPNTVELRALTGVTDLDQATQKLFEMGAKAVLVKGGHEDTPDFIKNSLYIDGELAASSTCPRLEGEYHGSGCSLASFIAGRLALGDSLKIAVQHAETWLFGVLKNAETPVPNGQKIPKRF
4YWR Chain:A ((10-246))-RPTVLCFSGLDPSGGAGLQADIEAIGQSGAHAAIACTALTIQNSQQVFGFEATSKELLLAQANAVVGDLPIKCVKSGMLGTTDNIAALAEFLRAHPDYQYVLDPVLVANSGGSLGDQATLVKAFVELIPLATLITPNTVELRALTGVTDLDQATQKLFEMGAKAVLVKGGHEDTPDFIKNSLYIDGELAASSTCPR---------CSLASFIAGRLALGDSLKIAVQHAETWLFGVL-----------------


General information:
TITO was launched using:
RESULT:

Template: 4YWR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1367 -153593 -112.36 -673.65
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain A : 0.95

3D Compatibility (PKB) : -112.36
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.95
QMean score : 0.611

(partial model without unconserved sides chains):
PDB file : Tito_4YWR.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YWR-query.scw
PDB file : Tito_Scwrl_4YWR.pdb: