Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKLTIRDIAEMAGVSVTTVSQILNNKGSRFSDKTRKKVLSIVNEHHYKPDYFASNVINRHSKTIGMIVPDVTDFFFSKLIEGVESYLNPLGYVIMLCNSRHSQENEIKYLQELSHRSVDGILLATPNILPEKYALDSGFYQKMPI-ILIDRGLNRRDNGRLIVKEYEGA-YQAVSLFIENGHTKIGMLKETTGY-YQLEERFNGYRHALKDHGLPFNGKFVEHGELTVQGGYTASKKLLK-HKDITAIFCGNDAMAIGCYQAIDELGKKIPEDISVIGFDGLKLSEYMIPQLTTVQQPSFDIGFYAARFLIDTIEFPQRKVPNKVFETKLIIRESVKVLTKG
3OQM Chain:A ((1-305))MNITIYDVAREANVSMATVSRVVNG-NPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVA----EFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLL--------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3OQM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1523 -55609 -36.51 -184.75
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.81

3D Compatibility (PKB) : -36.51
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.572

(partial model without unconserved sides chains):
PDB file : Tito_3OQM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3OQM-query.scw
PDB file : Tito_Scwrl_3OQM.pdb: