Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGQVTDDLANSIIAQLLFLDAQDSEKDIYLYINSPGGSVTAGMAIYDTMNFVKADVQTIVMGMAASMGSFLLTAGTKGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILQTRERLNKILAERTGQPLEVIEKDTDRDNYMTAEQAKAYGLIDEVMENSSSLN
4RYF Chain:H ((3-193))--LIPTVI--------AYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDIIINK----


General information:
TITO was launched using:
RESULT:

Template: 4RYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain H - contact count / total energy / energy per contact / energy per residue : 844 -124137 -147.08 -678.34
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain H : 0.95

3D Compatibility (PKB) : -147.08
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.95
QMean score : 0.546

(partial model without unconserved sides chains):
PDB file : Tito_4RYF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4RYF-query.scw
PDB file : Tito_Scwrl_4RYF.pdb: