Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLINEQLVKRVITPRPKISHKGTFGRIVLIGGNEQYGGAIIMSALAAVHSGAGLTTVVTDEKNRSALHSHLPEAMIVVWTDTD----------QFLSVIKQADVLLIGPGLGTSSKSLERFKQVLENQSKEQWLVIDGSALSLLAANHLLLPYPEQTVLTPHQMEWQRLSSLPIQEQRDKENKKKQ--QEIGAVLVLKSHETKIYGHQHFYTNPLGSAAMATGGMGDTLAGMITGFLAQFPQNDQTIAAAIYLHSFIGDQLAKEQYIVLPTQISEALPKWMNYFCKKSMENEA
3RRJ Chain:A ((222-497))-VITREMVRSLLPERPRDSHKGTYGKVLIIAGSRLYSGAPVLSGMGSLKVGTGLVKLAVPFPQNLIATSRFPE-LISVPIDTEKGFFSLQNLQECLELSKDVDVVAIGPGLGNNEHVREFVNEFL--KTLEKPAVIDADAINVLDTS-VLKERKSPAVLTPHPGEMARLVKKTVGDVKYNYELAEEFAKENDCVLVLKSATTIVTDGEKTLFNITGNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAELFEQDERGLTASELLRLIPEAI------------


General information:
TITO was launched using:
RESULT:

Template: 3RRJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1623 1697 1.05 6.43
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain A : 0.77

3D Compatibility (PKB) : 1.05
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.568

(partial model without unconserved sides chains):
PDB file : Tito_3RRJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3RRJ-query.scw
PDB file : Tito_Scwrl_3RRJ.pdb: