Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLENDIKKVLVSHDEITEAAKKLGAQLTKDY--AGKNPILVGILKGSIPFMAELVKHIDTHIEMDFMMVSSYHGGTASSGVINIKQDVTQDIKGRHVLFVEDIIDTGQTLKNLRDMFKEREAASVKIATLLDKPEGRVVEIEADYTCFTIPNEFVVGYGLDYKENYRNLPYIGVLKEEVYSN
5KNX Chain:A ((10-175))-------EVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGS----TRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYIG---------


General information:
TITO was launched using:
RESULT:

Template: 5KNX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 753 -42781 -56.81 -267.38
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain A : 0.84

3D Compatibility (PKB) : -56.81
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.562

(partial model without unconserved sides chains):
PDB file : Tito_5KNX.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5KNX-query.scw
PDB file : Tito_Scwrl_5KNX.pdb: