Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMFYSIKELVEQADLDFQGNVAELMITTEFELTGREREEVFLLMERNLEVMKASVQLGLNENKSRSGLTGGDAAKLDHYIENGKTLSDYTILSAARNAIAVNEHNAKMGLVCA-------TPTAGSAGCLPSVLTAAIEKLDLSHEQQLDFLFAAGAFGLVIA----NNASISGAEGGCQAEV-GSASAMSAAALTLAA--------------GGTPYQASQAIAFVIKNMLGL----ICDPVAGLVEVPCVKRNAMGASFAFIAADMALAGIESKIPVDEVIDAMYQVGASMPTAFRETAEGGLATTPTGRRLQKEIFGE
5N5X Chain:C ((1-440))MFEVPITLTNRKFAQRRKLKYQYINYISRRFDRISKQQKKRRRERHWR----SVSFEIWRTVSSQNKQPINKQKMT--YHNFKKIEKIPLRKMEIPLLHCTKENKLYFQSISRGLEPLKTSTSEVRNYRTRHIVTLTDLLHLNVSRH-NWSLAYKIFATLIRIPGVQIKSLWGIGVEILDNLSNSSSGLDFLQWMCQIYSSKSRSIVPPFQTGSRTHTAKFAITYLWSSLINCQKSMLIDKISEWVLTPPFMEDAE-VWFIYASCHLLKADINQVIKHIHYVRTFLKICLD---------KGGFAVPSRLIENQLKSFES


General information:
TITO was launched using:
RESULT:

Template: 5N5X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 823 -20383 -24.77 -74.66
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain C : 0.64

3D Compatibility (PKB) : -24.77
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.177

(partial model without unconserved sides chains):
PDB file : Tito_5N5X.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5N5X-query.scw
PDB file : Tito_Scwrl_5N5X.pdb: