Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKRIIAVHVPS-----PDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHINDQNPFALKEGVLVIE
5JF0 Chain:A ((13-204))LID-NDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEG-LSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE


General information:
TITO was launched using:
RESULT:

Template: 5JF0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 871 -17955 -20.61 -97.05
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain A : 0.93

3D Compatibility (PKB) : -20.61
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.93
QMean score : 0.572

(partial model without unconserved sides chains):
PDB file : Tito_5JF0.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5JF0-query.scw
PDB file : Tito_Scwrl_5JF0.pdb: