Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQILGGNNMAFPQLDLKSEKGPKAVIKTNRGDITVQLFPELAPKTVQNFIELS--KKGY-YDGVIFHRVIPDFMIQGGDPTG-TGMGGESIYGESFEDEFSRELFNLR----GALSMANSGPNTNGSQFFIVNNTNVPANMLGQLEGAGFPSEIIEAYKGGGTPWLDFRHTVFGHVLEGMDTVDEIANVQRGPQDRPVHDVVIETIEISE
4J5D Chain:X ((17-141))------------------------------GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE----NFTLKHVGPGVLSMANAGPNTNGSQFFICTIK---------------------------TDWLDGKHVVFGHVIEGMDVVKKI------------------------


General information:
TITO was launched using:
RESULT:

Template: 4J5D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain X - contact count / total energy / energy per contact / energy per residue : 563 23785 42.25 203.29
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain X : 0.72

3D Compatibility (PKB) : 42.25
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.519

(partial model without unconserved sides chains):
PDB file : Tito_4J5D.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4J5D-query.scw
PDB file : Tito_Scwrl_4J5D.pdb: