Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMALVKTKLAAAPQPSRTPTPGSSPKEWTPPTHTHESPEHLSTDEPDVLVPAHKYVYDVKTCAWKGVDTMLRVLHPNRGLSQGTMRVCFALEELDETGFSSRMVAKMFRHNISKVVESDYFNEGEAQCICGIFAEKFNRVQVPAGFQRHIVSFLQCETVRIKLSEVPEAYQHKRSGFFSYRTT-----DSADILFTMEPRLAGNFTKYTNNFGDVYDGFERRQSLEEEKKRHRVLMAVEAFSHFTLVESGGSMLVCDLQGVND----FLTDPQIHTEDGK--GLGMGNMGQDGIRKWMEAHVCNEVCRAIMLEPLSKGLRNFTRTAENESRVSYYQILRAKLRSQTPVRPEDIIPLSKPLSLMSDDERLEYAMRLSALLSE
4KUJ Chain:B ((46-270))-----------------------------------------------------------INQFLFQHSTFRV--ELAPFAKGGERLAFRAING----RGDRIVLKRFFQQR---PLTMLLETIERQLICIYLANIFNKLNVS----PNKLHFLPNYLFIPSPTK------DLDGKILTLEQTEQAVAATCRTPNFVEPYLSGYFIKYIDNNGWINES--------------EFHSTLHAFAHWTWVHTKGALLICDIQGVNANNKFYLTDPALHHIDQNKFIYSETNLGEVGISQFFRTHQCNAICQGLHLPKHKEQ---------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4KUJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 995 -33844 -34.01 -158.15
target 2D structure prediction score : 0.46
Monomeric hydrophicity matching model chain B : 0.67

3D Compatibility (PKB) : -34.01
2D Compatibility (Sec. Struct. Predict.) : 0.46
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.329

(partial model without unconserved sides chains):
PDB file : Tito_4KUJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4KUJ-query.scw
PDB file : Tito_Scwrl_4KUJ.pdb: