Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKAYTVEQGIVAPLDRANVDTDLIIPKQFLKSIKRTGFGDNLFDELRYLDEGYPGQDNSVRPKNPDFVLNQPRYQGATVLIARTNFGCGSSREHAPWALNEYGFRTVIAPSFADIFFNNCFKNGMLPVILPEDIVDQLFKECAAQEGYQLTIDLAAQEVRTPTGEAFKFEVDPFRKHCLLNGLDDIGLTLQNADAIRAYEEKTKQVRPWVFQEIN
3H5J Chain:B ((5-171))-EAFHTHSGIGVPLRRSNVDTDQIIPAVFLKRVTRTGFEDGLFAGWR---------------SDPAFVLNLSPFDRGSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQDDVELLWKLIEQSPGLEITANLQDRIITAAT-VVLPFKIDDHSAWRLLEGLD-------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3H5J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 889 -149353 -168.00 -894.33
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain B : 0.75

3D Compatibility (PKB) : -168.00
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.502

(partial model without unconserved sides chains):
PDB file : Tito_3H5J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3H5J-query.scw
PDB file : Tito_Scwrl_3H5J.pdb: