Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---------------MVNQNNSPSDMGKIPLSDDKNLMNIA---------QYLKGVQ-------QSHKRSIPPLEQ-WHPKH----------CGKMDLTVKAN--GEWWHEGQL-IKRQALLDLFTKVLWKEEGKFYLKTPVEQIEIEVEDEPLLVNQVDQIEISGDEFLQLTTTNQDVILV--DAEHPIFMREYAGELRPYVHVRF--GINALIQRQAF------YHLVNYG------------TLVE-NDKGETILQLKSGNLHLQ-LGT------
3NO2 Chain:A ((3-276))SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVK---LSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND-KVKFGMISTICPIRE


General information:
TITO was launched using:
RESULT:

Template: 3NO2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1067 8701 8.15 43.72
target 2D structure prediction score : 0.46
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 8.15
2D Compatibility (Sec. Struct. Predict.) : 0.46
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.170

(partial model without unconserved sides chains):
PDB file : Tito_3NO2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3NO2-query.scw
PDB file : Tito_Scwrl_3NO2.pdb: