Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRFYSLYLHDDACKNRQNLSSCRTYSVSLEFESRRDNMSNENQKPTSPTEQAQSSDKVSPFLSSPLPQGTPQGQQQSLQQTLTDTPVSGSVPKYNLPRGAGNTGNVGETTHFGYSTVRTEDKAQKVAEVFHSVASKYDLMNDLMSFGIHRLWKRFAINM--SGVRRGQ----HVLDIAGGTGDLA-----KVFSREVGPQGHVVLSDINESMLNVGRDRLIDAGCT----NVDFVLANAETLEPFADNSFDLVTISFGLRNVTDKDAALASMFRVLKPGGRLLVLEFSKPVFEPFSKLYDLYSFTALPIMGKLVANDSESYKYLAESIRMHPDQRTLKGMMENAGFQNCDYHNLTGGIVAVHRGFKL
4OBX Chain:C ((23-257))-----------------------------------------------------------------------------------------------------------------------------------SVANRYDLMNDVMSLGIHRLWKDHFINKLDAGKRPNSTTPLNFIDVAGGSGDIAFGLLDHAESKFGDTESTMDIVDINPDMLKEGEKRAMEQGKYFKDPRVRFLVSNGEKLEEIDSDSKDIYTVSFGIRNFTDIQKGLNTAYRVLKPGGIFYCLEFSK-IENPLMDFAYQQWAKVLPVMGSMIANDYDSYQYLVESIERFPDQETFKSMIEKAGFKSAGYESLTFGICAIHWGIKV


General information:
TITO was launched using:
RESULT:

Template: 4OBX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1004 44255 44.08 201.16
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain C : 0.73

3D Compatibility (PKB) : 44.08
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.430

(partial model without unconserved sides chains):
PDB file : Tito_4OBX.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4OBX-query.scw
PDB file : Tito_Scwrl_4OBX.pdb: