Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKYSEYQPRPDLLKDRIILITGAGDGIGRAAALSYALHGATVVLHGRTLNKLEVIYDEIEGLGAPQPAILPLQLSSASDRDYDFLVSTLEKQFGRLDGILHNAGILGERVELAHYPAEVWDDVMAVNLRAPFALTQALLPLLQKSENASVVFTSSGVGREARALWGAYSVSKVAIEAVSKIFAAEHTYPNIRFNCINPGATRTAMRAKAYPEEDPKTLPTPESIMPAYLYLMGEDSLTLNGQSIDAQD
3GZ4 Chain:B ((7-245))-------PKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSEDCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQDPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQ-RLRVNCINPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQ-


General information:
TITO was launched using:
RESULT:

Template: 3GZ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1275 -134957 -105.85 -564.67
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain B : 0.84

3D Compatibility (PKB) : -105.85
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.609

(partial model without unconserved sides chains):
PDB file : Tito_3GZ4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3GZ4-query.scw
PDB file : Tito_Scwrl_3GZ4.pdb: