Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDIS-GKTQIQSVEPYTKQQLNNMSFAEIIMGYKIMDATNILVSPLVYLY
1YVL Chain:B ((578-668))-IMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERS-NGGEPDFHAVEPYTKKELSAVTFPDIIRNYKVMAAENIPENPLKYLY


General information:
TITO was launched using:
RESULT:

Template: 1YVL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 316 -20927 -66.22 -235.13
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain B : 0.88

3D Compatibility (PKB) : -66.22
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.88
QMean score : 0.654

(partial model without unconserved sides chains):
PDB file : Tito_1YVL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YVL-query.scw
PDB file : Tito_Scwrl_1YVL.pdb: