Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTKQFAVIGNPIEQSRSPELHHAFAEKTGVDLNYQKRLAPLDGFESSMRSFFAEGGSGMNVTVPFKEQAFALCNVLTERAQIAKAVNTL-WMENGKLHGDNTDGQGLVAAIQALEWNLENTTILILGAGGATRGVIYPLVQAGAKKIVIANRTLARAEQLVDDLKTAVPQAQLQAISLNDLEGDFDIVINATSASLSGDALQLPEKLKF---KYAYEMAYGKPSSFLDQAKQRNVPYA-EGFGMLVGQAIEAFSIWNGVRPQLKDFL
3SEF Chain:C ((31-291))---QYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKK-DDGEILGDNTDGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLA-ELVAAYGEVKAQA--FEQLKQSYDVIINSTS---------AIDPVIFSSRSVCYDMMYG-----------------IDGLGMLVGQAAESFMLWRGLRPGTKQIL


General information:
TITO was launched using:
RESULT:

Template: 3SEF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1266 -47588 -37.59 -207.81
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain C : 0.82

3D Compatibility (PKB) : -37.59
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.515

(partial model without unconserved sides chains):
PDB file : Tito_3SEF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3SEF-query.scw
PDB file : Tito_Scwrl_3SEF.pdb: