Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLQAVYLTPIELHQTPDWSDRPYNIHRDPLWKTEKQGKEFDDVWFYHCDHLGTPQEMTDHTGAIIWKAEYKAWGECKAEKAKSNFFENSEIISNNIRFQGQ-YFDE-ETGLHYNRYRYYSPYVGRFVSKDPIGLLGGSNNYAYAPSPTEWV-DPLGLSCQKIPKGFKSF-----GQLKQFGQAMQAGFSKLGFKGAT---MYMQGSAHSGRSFETGKAFDD--GRVSDFD---IAVVQPEL---FEKAKKMGIAKGNRTLPIEIN-SVEAN---KLGINGVLQKMSKLAGGR-DVNVMIFDSPESAKAKAEGTRIPANCM---------------------
4UY5 Chain:A ((2-327))--------TLSLANYLAADSAAEALRRDVRAGLTAAPKSLPPKWFYDAVGSDLFDQITRLPEYYPTRTEAQILRTRSAEIIAAAGADTLVELGSGTSEKTRMLLDAMRDA---ELLRRFIPFD---VDAGVLRSAGAAIGAEYPGIEIDAVCGDFEEHLGKIPHVGRRLVVFLGSTIGNLTPAPRAEFLSTLADTLQPGDSLLLGTDLVKDTGRLVRAYDDAAGVTAAFNRNVLAVVNRELSADFDLDAFEHVAKWNSD-EERIEMWLRARTAQHVRVAALDLEVDFAAGEEMLTEVSCKFRPENVVAELAEAGLRQTHWWTDPAGDFGLSLAVRLEHHHH


General information:
TITO was launched using:
RESULT:

Template: 4UY5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1316 23616 17.94 84.04
target 2D structure prediction score : 0.43
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : 17.94
2D Compatibility (Sec. Struct. Predict.) : 0.43
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.114

(partial model without unconserved sides chains):
PDB file : Tito_4UY5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4UY5-query.scw
PDB file : Tito_Scwrl_4UY5.pdb: