Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQLISLPKQILQCGQLQLDLSQPHVMGILNVTPDSFSDGGKHNQLDQAVDHALSMIEQGATIIDIGGESTRPGASEVAVEEEVRRVVPVVEALSHH-NVILSIDTSQPEVIRAAKAAGAHIWNDVRALTGPNALKTAVELDIPVVIMHMRGEPTTMNQLDQYTDVTLDVMQELQQRIDEALAAGVKKHNIIVDPGFGFAKNAQQNLKLLKEFWKLNELGYPILSGLSRKRFIGEALQGAPADQRAVGSVTGHLLSIQQGASIVRAHDVKEMHEAILVWKAMQQA
5JQ9 Chain:B ((10-277))---------------LTLDLSRPQVMGILNVT-----------NLDQALQHAQRMLSAGATLIDIGGEST-----EVSEQEELDRVVPVVEALAQRFDVWLSVDTSKAAVITESAHAGAHLINDIRSLQEPGALEAAAKTGLPVCLMHMQ---------PYYDDLMTDINRFFQHHIERCVAAGIAKNKLLLDPGFGFGKNLAHNYQLLAHLSELHHFELPLLVGMSRKSMVGQLLN-VPPQQRVIGSVACAVIAAMQGAQIIRVHDVKETVEAMCIVEATRSA


General information:
TITO was launched using:
RESULT:

Template: 5JQ9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1317 -85630 -65.02 -353.84
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain B : 0.84

3D Compatibility (PKB) : -65.02
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.574

(partial model without unconserved sides chains):
PDB file : Tito_5JQ9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5JQ9-query.scw
PDB file : Tito_Scwrl_5JQ9.pdb: