Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---------------MKNKNIGCWLLLAGSSSVCA--MQPLDDQSLAAATGQNGLTLGIQADQ--VKFNQVALIDTNGIASTSYNSKAGLIIAGNSTNPVPGIEFIKAAVSTNPSFNIAID---------TDAGGGNPFLNLAVTMGSDVNGIRLLPFSVYLAPSTSLPSPSDYALTSYAPKSI-----FSSGTTVNTGVKELIRSTGN-----LDINFVQTNKPRLNIQLGHAAQ--SVMVKFGGA-------IQSICSAASGCPITLVSDNTGATFG---------FKFAGTNASTGFVLDGFYAGVDPTGLTIGNIGVSSKFDASLN---------------NVTLGNLGTQSTTTFNNLPNGSMGSFGVTGASVT----------DFKMKVSGF-----
1G8L Chain:A ((7-409))LMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFG


General information:
TITO was launched using:
RESULT:

Template: 1G8L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1666 10029 6.02 31.64
target 2D structure prediction score : 0.49
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : 6.02
2D Compatibility (Sec. Struct. Predict.) : 0.49
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.132

(partial model without unconserved sides chains):
PDB file : Tito_1G8L.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1G8L-query.scw
PDB file : Tito_Scwrl_1G8L.pdb: