Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMILEYSDQLWVPQIKSWRLNERHYGKLQGLNKKETAEKYGDEQVHIWRRSYDTLPPLMEETDEGSAANDRRYAMLDKRDIPGGENLKVTLERALPFWQDEIAPALLDNKTVLVAAHGNSLRALAKHIEGISDEDIMDLEIPTGQPLVYELNDDLTVAKKYYL
5UM0 Chain:D ((74-235))IVLEESDQLFVPQIKTWRLNERHYGRLQGLDKKQTAEKYGDEQVRIWRRSYDTLPPLLDKDDAFSAHKDRRYAHLPADVVPDGENLKVTLERVLPFWEDQIAPAILSGKRVLVAAHGNSLRALAKHIEGISDEDIMGLEIPTGQPLVYKLDDNLKVIEKFYL


General information:
TITO was launched using:
RESULT:

Template: 5UM0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 548 -41795 -76.27 -257.99
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain D : 0.94

3D Compatibility (PKB) : -76.27
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.94
QMean score : 0.493

(partial model without unconserved sides chains):
PDB file : Tito_5UM0.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5UM0-query.scw
PDB file : Tito_Scwrl_5UM0.pdb: