Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLKILGRDNSINVRKVLWLCDELNLTYEREDWGKGFRSAQSPEFLQLNPNGQIPVILDGDLVLWQSNSIIRYLANAYDKDHILYPTQAKQRAIIDQWIDWQAIELNNSWTYAFMSLIRHSALHQDPNLLQQGIDQWNKQMQILDQQLAKTQAYVAGTEFTLADIPIGLSVQRWKATPFDHPALKHVDQYFERLNQRKGFLKWGNNGQP
4KDX Chain:B ((23-229))MLQILGKPTSINVRKVLWTCAELGLAFEREDWGAGFRPTNVPEFLALNPNAMVPVIRDGDFVLWESNSIIRYLAGRYGGEW-LYPADARERARCDQWIDWQASELNRSWSYAFLALVRQSPAHRDAQQIEASRANWAKHMAIVEGQLQRTGAFIAGDAFSLADIPIALSINRWLETPIARDDLPAVDAYMTRLASRDAYREYCRNGTP


General information:
TITO was launched using:
RESULT:

Template: 4KDX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 981 -120478 -122.81 -582.02
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain B : 0.87

3D Compatibility (PKB) : -122.81
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.87
QMean score : 0.476

(partial model without unconserved sides chains):
PDB file : Tito_4KDX.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4KDX-query.scw
PDB file : Tito_Scwrl_4KDX.pdb: