Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPLIIGIDPGSRLTGYGIIEKDGSKLRFVDAGTIRTETQEMPERLKRIFAGVERIVKFHGPTEAAVEQVFMAQNP--DSALKLGQARGAAIAA--------LVNLDLQVAEYTARQIKQSVVGYGAADKEQVQMMVMR---------LLNLTIKPQADAADALAAAICHAHASGSMSKLT------------------------VLNALGGMARGRSRSSSRRR----
1OKJ Chain:A ((20-238))GLRILAIDTATEACSVALWN---------DGTVNAHFELCPREHTQRILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGAWRKNGATRVLAAIDARMGEVYWAEYQRDENGIWHGEETEAVLKPEIVHERMQQLSGEWVTVGTGWQAWPDLGKESGLVLRDGEVLLPAAEDMLPIACQMFAEGKTVAVEHAEPVYL


General information:
TITO was launched using:
RESULT:

Template: 1OKJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 834 -34592 -41.48 -201.12
target 2D structure prediction score : 0.48
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : -41.48
2D Compatibility (Sec. Struct. Predict.) : 0.48
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.371

(partial model without unconserved sides chains):
PDB file : Tito_1OKJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1OKJ-query.scw
PDB file : Tito_Scwrl_1OKJ.pdb: