Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQMEMQLMAFELVDLDRQGTRMKIIFVRHGEPDYRELEERSYIGFGIDLAPLSEMGRQQVQKLSKNPLLSSAEIIVSSAVTRALETASYVVCATGLPLRVEPLLHEWQVY-KTGIE--NFETAR----RLFLENKGELLPNSPIQYETATEMKSRFLECMSKYRE-----------HQTVVVVAHRMLMRQFVPN----E--------KIDFCQVIECELEI
4PZA Chain:B ((2-196))-------------------RARRLVMLRHGQTDYNVGS--RMQGQ--LDTELSELGRTQAVAAAEVLGKRQPLLIVSSDLRRAYDTAVKLGERTGLVVRVDTRLRETHLGDWQGLTHAQIDADAPGARLAWRED----ATWAPHGGESRVDVAARSRPLVAELVASEPEWGGADEPDRPVVLVAHGGLIAALSAALLKLPVANWPALGGMGNASWTQLSGHW


General information:
TITO was launched using:
RESULT:

Template: 4PZA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 772 -30346 -39.31 -183.92
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain B : 0.67

3D Compatibility (PKB) : -39.31
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.457

(partial model without unconserved sides chains):
PDB file : Tito_4PZA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4PZA-query.scw
PDB file : Tito_Scwrl_4PZA.pdb: