Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSKEKVILAYSGGLDTSVAITWLKKD--YDVVAVCMDVGEG-KDLDFIHDKALKVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGATTIAHGCTGKGNDQVRFEVSIAALDLNLKVIAPVREWKWSREEEIYYAKENGVPVPADLDNPYSVDQNLWGRANECGILENPWNQAPEEAFGITTSPEQAPDMPEYIEIEFSEGVPVSLNGEVLKLADLIQKLNEIAGKHGVGRIDHVENRLVGIKSREIYECPGAVTLLTAHKEIEDLTLVREVAHFKPIIENELSNLIYNALWFSSATQALIAYIKETQKVVNGTAKVKLYKGSAQVVARKSPSSLYDENLATYTSADTFDQDAAVGFIKLWGLPTKVHSEVQKSAK
4U7J Chain:B ((11-402))---ERVILAYSGGLDTSVAISWIGKETGREVVAVAIDLGQGGEDMEVVRQRALDCGAVESIVIDARDEFANDYCVPAIQSNALYMDRYPLVSALSRPLIVKHLVKAAREHGGTIVAHGCTGKGNDQVRFEVGFASLAPDLEVLAPVRDYAWTREKAIAFA-------NVTKRSPFSIDQNVWGRAVETGFLEHLWNAPTKDVYSYTEDPTVNWSTPDEVIVGFEQGVPVSIDGRSVTPLQAIEELNRRGGEQGVGRLDVVEDRLVGIKSREIYEAPGAMVLITAHTELEHVTLERELGRFKRITDQKWGELVYDGLWFSPLKTALESFVAKTQEHVTGEIRMVLHGGHIAVNGRRSPKSLYDFNLATYDEGDTFDQSAAKGFVQIHGLSSSISAR------


General information:
TITO was launched using:
RESULT:

Template: 4U7J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1949 -30483 -15.64 -79.80
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain B : 0.86

3D Compatibility (PKB) : -15.64
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.86
QMean score : 0.415

(partial model without unconserved sides chains):
PDB file : Tito_4U7J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4U7J-query.scw
PDB file : Tito_Scwrl_4U7J.pdb: