Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMISNKVDITLANFTVTDERKKQVDFALPYMKVSLGVVSPKTGLITDVKQLEGKTLIVTKGTTAETYFEKNHPEIKLQKYDQYSDSYQALLDGRGDAFSTDNTEVLAWALENKGFEVGITSLGDPDTIAAAVQKGNQELLDFINKDIEKLGKENFFHKAYEKTLHPTYGDAAKADDLVVEGGH
2YJP Chain:C ((115-291))--SGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNKPITDMAQLKDQTLLVNKGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTLLPVYGEKVKPEALLAE---


General information:
TITO was launched using:
RESULT:

Template: 2YJP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 770 -82446 -107.07 -465.79
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain C : 0.84

3D Compatibility (PKB) : -107.07
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.557

(partial model without unconserved sides chains):
PDB file : Tito_2YJP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2YJP-query.scw
PDB file : Tito_Scwrl_2YJP.pdb: