Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKSIIDVKNLSFRYKENQNYYDV--KDITFHVKRGEWLSIVGHNGSGKSTTVRLIDGLLEAESGEIVIDGQRLTEENVW--NIRRQIGMVFQNPDNQFVGATVEDDVAFGLENQGLSRQEMKKRVEEALALVGML-DFKKREPARLSGGQKQRVAIAGVVALRPAILILDEATSMLDPEGRRELIGTVKGIRKDYDMTVISITHDLEEVA-MSDRVLVMKKGEIESTSSPRELFSRND-LDQIGLDDPFANQLKKSLSQNGYDLPENYLTESELEDKLWELL
4MKI Chain:A ((7-284))----IKVENVSFIYNEGTPYATVALKDINFSIDDEEFVGIIGHTGSGKSTLIQQLNGLLKPSKGKIYINGIDITDKKVSLKDIRKQVGLVFQYPEYQLFEETVFKDIAFGPSNLGLSEEEVKERVYEAMEIVGISKELADKSPFELSGGQKRRVAIAGILAMRPKILILDEPTAGLDPKGKQEILNKIKEIHDKYKMITILVSHNMEDIARIADKIIVMNRGKIELIGTPREVFREAERLEKIGLSVPQITSLARELRKRGVPIPPDVLTIEEAKEHILRYL


General information:
TITO was launched using:
RESULT:

Template: 4MKI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1395 69899 50.11 257.93
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.86

3D Compatibility (PKB) : 50.11
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.86
QMean score : 0.514

(partial model without unconserved sides chains):
PDB file : Tito_4MKI.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4MKI-query.scw
PDB file : Tito_Scwrl_4MKI.pdb: