Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPRPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKAADGFALLDLEEAKRIRALGWTGPILLLEGVFSPQDLFDCVQYQLSFTIHSEAQIEWVEQHPYPAQFDVFLKMNSGMSRLGFKPQHYVQAWERLNNLANVAKITHMM-HFSDADGDRFGQQGIDYQITAFEEIVKDLPGERSVSNSAAILRYQDQLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTMSLRSEIISVQHLEPNESVGYGSNFVAEQPMTIGIVACGYADGYQRISPTGTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSEVVLWGQSSTGVVLPIDDVAVSSGTVGYELMCAVTARVQFINQV
4XBJ Chain:C ((5-353))-----TVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEA-LDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCG--ATEKQLAIFNTFCEGKPGQRSIAASGGILLWP-QSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVS-RDTRLGVVAMGFGDGYPRAAPSGTPVLVN-REVPIVGRVAMDMICVDLGPQAQDKAGDPVILWG-G-----LPVERI--MTKVSAYELITRLTSRV------


General information:
TITO was launched using:
RESULT:

Template: 4XBJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1979 -147187 -74.37 -430.37
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain C : 0.82

3D Compatibility (PKB) : -74.37
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.508

(partial model without unconserved sides chains):
PDB file : Tito_4XBJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4XBJ-query.scw
PDB file : Tito_Scwrl_4XBJ.pdb: