Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKMNKQPQNSALVVVDVQNGF-TPGGNLAVADADTIIPTINQLAG--CFENVVLTQDWHPDNHISFAANHPGKQPFETIELDYGSQVLWPKHCIQGTHDAEFHPDLNIPTAQLIIRKGFHAHIDSYSAFMEADHTTMTGLTGYLKERGIDTVYVVGIATDFCVAWTALDAVKQGFKTLVIEDACKGIDLNGSLEQAWQT----MQQQGVIRIQSTDLLNEC
3R2J Chain:D ((37-223))-----------LIIADMQVDFLAPGGSLHVKGGEALLDGINAVSSQLPFRYQVATQDWHPENHCSFV-THGGP---------------WPPHCVQGSAGAQLHAGLHTQRINAVIRKGVTQQADSYSAFVE-DNGVSTGLAGLLHSIGARRVFVCGVAYDFCVFFTAMDARKNGFSVVLLEDLTAAVD-----DAAWSARTAELKDAGVVLLKSSALVAE-


General information:
TITO was launched using:
RESULT:

Template: 3R2J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1002 -24348 -24.30 -135.26
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain D : 0.79

3D Compatibility (PKB) : -24.30
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.484

(partial model without unconserved sides chains):
PDB file : Tito_3R2J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3R2J-query.scw
PDB file : Tito_Scwrl_3R2J.pdb: