Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKALLDFVPLIIFFYL------------YKTVDPADTQHPLLKLIGSAGGV---DNNN-ILV----------ATTGLI---ISMLVVYGALFIMQKFRLDKQQWIVLFMTVIFGGITLMLSDDFYIRLKAAILNLVFAGAFLVSPWFGKDRKPLIQRLFDPILALSEKGWKNLNFAWAAMFVVMSGLHVFFAFLFHGG-KYWGEFTAFG--DMIVMFSFIIIQFII--LRKHFKSPDA-
5H0J Chain:A ((1-234))---MMTFADKVIQFNKDLSYTGSTLPPGIRIMNPFKEHEQTMHIVEAFYHKYYNDNQSRYLILGINPGRFGSGLTGIPFTDPKRLITECNIPYSGKLSHEPSSVFIYEMINAFGGAEAFYKQ-FYISSPCPLGFTSIAANGKEKNYNYYDSKALEKAVYEFIIENIRKQLT-LGITTDTCFCLGTGKNEKFLMKVNAQYKFFKRIVALEHPRFIMQYKTASKQFYIDKYISAFKALNNS


General information:
TITO was launched using:
RESULT:

Template: 5H0J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 944 -85327 -90.39 -428.78
target 2D structure prediction score : 0.46
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -90.39
2D Compatibility (Sec. Struct. Predict.) : 0.46
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.238

(partial model without unconserved sides chains):
PDB file : Tito_5H0J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5H0J-query.scw
PDB file : Tito_Scwrl_5H0J.pdb: