Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMILITGANGQLGTELRYLLDERNEEYVAVDVAEMDITDAEMVEKVFEEVKPTLVYHCAAYTAVDAAEDEGKELDFAINVTGTKNVAKASEKHGATLVYISTDYVFDGKKPVGQEWEVDDRPDPQTEYGRTKRMGEELVEKHVSNFYIIRTAWVFGNYGKNFVFTMQNLAKTHKTLTVVNDQYGRPTWTRTLAEFMTYLAENRKEFGYYHLSNDATEDTTWYDFAVEILK--DTDVEVKPVDSSQFPAKAKRPLNSTMSLAKAKATGFV-IPTWQDALQEFYKQEVR
3SC6 Chain:D ((8-281))-VIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKE-RDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEG--YDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSL-YGTYHVSN--TGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFF-----


General information:
TITO was launched using:
RESULT:

Template: 3SC6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1548 -129836 -83.87 -479.10
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain D : 0.81

3D Compatibility (PKB) : -83.87
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.499

(partial model without unconserved sides chains):
PDB file : Tito_3SC6.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3SC6-query.scw
PDB file : Tito_Scwrl_3SC6.pdb: