Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence ---------------------------------M-SFWQKLFLADQQHNEHKNQTACVENDCSCKTNEQLLSALAQATDEDVIKGIKK-----VLISRGYS-RKELNELTQKT-SIH---------------------------------------------------- 3VGP Chain:A ((428-591)) GPDLTEDWKEALEWMRTSLEEQNYNPYEKPEYSVMSWWD-----YGNWILYVSKKAVVANN-FQAGAVDAAKFFTAKSEDEAIKIAKKRGVRYVVTADEITMKDANNTKFPAIMRIAGYNVDLMTEGEILNFFNHTVLYRLHMENAENLTHFRLVKEFGDVKIFEVVGS

General information: TITO was launched using: RESULT: Template: 3VGP.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 177 5623 31.77 80.33 target 2D structure prediction score : 0.54 Monomeric hydrophicity matching model chain A : 0.57 3D Compatibility (PKB) : 31.77 2D Compatibility (Sec. Struct. Predict.) : 0.54 1D Compatibility (Hydrophobicity) : 0.57 QMean score : 0.408

(partial model without unconserved sides chains): PDB file : Tito_3VGP.pdb: (Unconserved sides chains are recalculated) : Sequence: align-3VGP-query.scw PDB file : Tito_Scwrl_3VGP.pdb: