Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKMKKYKIRKSGNSDVTTIPPEVK-----EFMGVQTGDAISYVFQSDGSVRMIKAQEEP-DIDSLVDSIMNQYEDALKDLVDL
5K8J Chain:A ((6-85))HHARATGKTFRSGNSEAVRLPRDLAFGADVELTLIRSGD-VLTIYPSKGSIADLVATLNQMPRP---DSVEIRDEDLFPERPGL


General information:
TITO was launched using:
RESULT:

Template: 5K8J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 100 6643 66.43 89.77
target 2D structure prediction score : 0.39
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : 66.43
2D Compatibility (Sec. Struct. Predict.) : 0.39
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.410

(partial model without unconserved sides chains):
PDB file : Tito_5K8J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5K8J-query.scw
PDB file : Tito_Scwrl_5K8J.pdb: