Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKRALFPGSFDPFTKGHLDTVERAAKLFDEVVIGVFINTSKKSLFPPEERMTLITKAVSHLPNVKVMHQENQLTVETAKEIGADALIRGIRSIKDFEYEREIAQMNHHLYDELETVFLLAKPEYSHVSSSILKEVLHFGGDVSSYLPPVINEALAGKRESNES
3ND7 Chain:D ((3-158))-KIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFI------LFTPEEKKYLIEEATKEMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQK------


General information:
TITO was launched using:
RESULT:

Template: 3ND7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 667 -83735 -125.54 -558.23
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain D : 0.90

3D Compatibility (PKB) : -125.54
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.90
QMean score : 0.545

(partial model without unconserved sides chains):
PDB file : Tito_3ND7.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3ND7-query.scw
PDB file : Tito_Scwrl_3ND7.pdb: