Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMVIALFSKNWSRTMSATIVNTTDDNFQADVLDAETPVLVDFWAGWCAPCKAIAPVLEDLSSEYAGKVKIVKVDVTSCEETAVKYNIRNIPALLLFKNGEVVAQQIGAVPRSKLVSFIDENV
2YN1 Chain:B ((3-105))-----------------IIHVTDDSFDQDVLKADKPVLVDFWAEWCGPCKMIAPILDEIAEEYEGKLKVAKVNIDENPETAAKYGIRGIPTLMLFKNGEVAATKVGALSKSQLKEFLDAN-


General information:
TITO was launched using:
RESULT:

Template: 2YN1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 456 -81250 -178.18 -788.83
target 2D structure prediction score : 0.76
Monomeric hydrophicity matching model chain B : 0.81

3D Compatibility (PKB) : -178.18
2D Compatibility (Sec. Struct. Predict.) : 0.76
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.778

(partial model without unconserved sides chains):
PDB file : Tito_2YN1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2YN1-query.scw
PDB file : Tito_Scwrl_2YN1.pdb: