Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIDLYYWGTPNGHKITIALEEMGLDYTLYPINILENDQFQPDFLKISPNNKIPAIVDQDGPRGEPISVFESGAILQYLGRKTGLFYPTDEQERVEVEQWLMWQMGGLGPMLGQNHHFNRFA----PEKIPYAIDRYVNETKRLYGVLNKQLIRQKFVAGEYSIADMAILPWIL----RYEWQG-IQLEDYPYVQEYIVRLTARPAVQKALSIKVI
4NAX Chain:B ((21-229))-LQLYSLPTPNGVKVSIMLEEIGLAYEAHKVSFDNDDQLSPEFISLSANNKIPAILDPNGPGGQPLPLFESGAILQYLAEKSGQLLSQDPAQRYQTLQWLMFQMGGIGPMFGQVGFFHFFAGKEYEDKRPR--DRYVNESKRLLGVLDRHLKGRQWMAEEYSIADIAIFPWVRNLVERYNARDLVGFDQFKEVQRVLANFLERPAVQHGLKI---


General information:
TITO was launched using:
RESULT:

Template: 4NAX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 946 -66710 -70.52 -333.55
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain B : 0.83

3D Compatibility (PKB) : -70.52
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.536

(partial model without unconserved sides chains):
PDB file : Tito_4NAX.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4NAX-query.scw
PDB file : Tito_Scwrl_4NAX.pdb: