Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKYQRMHLIFIRQYIKQIMEYKVDFVVGVLGVFLAQGLNLLFLNVIFQHIPFLEGWTFQEIAFIYGFSLIPKGMDHLFFDNLWALGQRLVRKGEFDKYLTRPI-NPLFHILVETFQIDALGELLVGGILLG-TTVTSIVWTLPKFLLFLVCIPFATLIYTSLKIATASIAFWTKQSGAMIYIFY---MFNDFAKYPISIYNSLLRWLISFIVPFAFTAYYPASYFLQEKD---------------------------VFFNVGGLMLISLVFFVISLKLWDKGLDSYESAGS
5DO7 Chain:B ((397-675))---AVQQFTTLIRRQISNDFRDLPTLLIHGA----EACLMSMTIGFLYFGHGSI-QLSFMDTAALLFMIGALIPF---NVILDVISKC-YSERAMLYYELEDGLYTTGPYFFAKILGELPEHCAYIIIYGMPTYWLANLRPGLQPFLLHFLLVWLVVFCCRIMALAAAALLPTFHMASFFSNALYNSFYLAGGFMINLSSLWTVPAWIS-KVSFLRWCFEGLMKIQFSRRTYKMPLGNLTIAVSGDKILSVMELDSYPLYAIYLIVIGLSGGFMVLYYVSLRFIKQKPSQDW-


General information:
TITO was launched using:
RESULT:

Template: 5DO7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1031 -181961 -176.49 -736.68
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain B : 0.62

3D Compatibility (PKB) : -176.49
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.262

(partial model without unconserved sides chains):
PDB file : Tito_5DO7.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5DO7-query.scw
PDB file : Tito_Scwrl_5DO7.pdb: