Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----------------MKKPVPKIYRTTNWSSYNQALIKRGNISIWFDPKTQWYAQPQG---KHGRNQTYSDAAIQCCL--------MIKSLFR------LSLRMVTGFA--------QSLIKLCG----------------------LNWTAPDYSTLCRRQKRIDIAIS----YQQSRDGLHLLVDSTGLKFLGEGEWKRKKHQPAY-RRQWRKLHIGIDAKTLQIRAVQLTTNNVSDSQVLGDLLDQIPL-DERIDSVYTEGAYDTKHCRQVILDRDAHAVIPPR---------------KNAKPWKDKKLRSLERN-----ELLKTVKRLGRSLWKKW------------SGYHRRSLVETKMHCIK----
1YT3 Chain:A ((1-375))MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ


General information:
TITO was launched using:
RESULT:

Template: 1YT3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1229 13075 10.64 48.60
target 2D structure prediction score : 0.49
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : 10.64
2D Compatibility (Sec. Struct. Predict.) : 0.49
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.176

(partial model without unconserved sides chains):
PDB file : Tito_1YT3.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YT3-query.scw
PDB file : Tito_Scwrl_1YT3.pdb: