Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKDIYVEFRGKYKVDGESRDSEHKGWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMVFVKDLDATSPKLWEACSAGYTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEE-GVPTEAFGLKYAAVEWTYNQQDINGTAKG-AVTKKWSLSNNTASYAA
1Y12 Chain:C ((2-161))AVDMFIKIG-D--VKGESKDKTHAEEIDVLAWSWGMSQSGSMHMG--GGGGAGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQ----


General information:
TITO was launched using:
RESULT:

Template: 1Y12.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 686 -11105 -16.19 -70.28
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain C : 0.77

3D Compatibility (PKB) : -16.19
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.555

(partial model without unconserved sides chains):
PDB file : Tito_1Y12.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1Y12-query.scw
PDB file : Tito_Scwrl_1Y12.pdb: