Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSQEEKLPKILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVMLPGADGLTVCREVRP-HYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDKTVEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKETNGL
5ED4 Chain:B ((25-246))--------RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGVLRRLRADGIDAPALFLTAR-----KIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG--------VRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVL-------


General information:
TITO was launched using:
RESULT:

Template: 5ED4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 978 -62759 -64.17 -301.73
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain B : 0.80

3D Compatibility (PKB) : -64.17
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.511

(partial model without unconserved sides chains):
PDB file : Tito_5ED4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5ED4-query.scw
PDB file : Tito_Scwrl_5ED4.pdb: